SS4.02 Ecology and Physiology of Marine Organisms: Insights from Genes, Genomes, and Proteomes

Session Organizer(s):
Bethany, D. Jenkins
University of California Santa Cruz
bjenkins@es.ucsc.edu

Jackie, L. Collier
Marine Science Tesearch Center,SUNY Stony Brook
jcollier@notes.cc.sunysb.edu

If your abstract is listed without a time, your abstract has been selected as a poster presentation. Please click on the title of your abstract to see the date at which your poster will be presented.

Date: Wednesday, February 18, 2004

Location: 316 C

10:15 AM
Armbrust, E V DIATOM GENOME PROJECT: NEW INSIGHTS INTO DIATOM PHYSIOLOGY AND ECOLOGY

10:45 AM
Hildebrand, M CLONING AND FUNCTIONAL CHARACTERIZATION OF DIATOM AMMONIUM TRANSPORTERS

11:00 AM
Takabayashi, M ; Griffin, G A ; Barada, L P ; Wilkerson, F P APPLICATION OF REAL-TIME PCR TO STUDY THE ENVIRONMENTAL REGULATION OF GENE EXPRESSION OF NITROGEN ASSIMILATION IN DIATOMS

11:15 AM
Davis, A K ; Hildebrand, M ; Palenik, B CHARACTERIZATION OF A CELL-SURFACE PROTEIN ASSOCIATED WITH THE GIRDLE BAND REGION OF THE DIATOM THALASSIOSIRA PSEUDONANA

11:30 AM
Boissonneault, K R ; Bates, S S ; Milton, S ; Pelletier, J ; Housman, D GENE EXPRESSION PROFILING IN THE TOXIC MARINE DIATOM PSEUDO-NITZSCHIA MULTISERIES USING MICROARRAY TECHNOLOGY

11:45 AM
Rynearson, T A ; Armbrust, E V SPRINGTIME SUCCESSION OF PLANKTONIC DIATOM BLOOMS: SAME SPECIES, DIFFERENT POPULATIONS?

1:30 PM
Schoenfeld, T ; Godiska, R ; Rohwer, F ; Sheets, L ; Patterson, M ; Mead, D SINGLE CELL GENOMICS OF HYPERTHERMOPHILES

1:45 PM
Foster, R A ; Carpenter, E J ; Bergman, B A PHYLOGENETIC AND ULTRASTRUCTURAL CHARACTERIZATION OF THE CYANOBACTERIAL PASSENGERS IN AN UNKNOWN TINTINNID SP. AND A SPONGIOSE RADIOLARIAN, DICTYOCORYNE SP.

2:00 PM
Mann, E L ; Barbeau, K A ; Haygood, M G BACTERIA ASSOCIATED WITH TRICHODESMIUM COLONIES: PHYLOGENETIC DIVERSITY AND POTENTIAL ROLE IN IRON ACQUISITION

2:15 PM
Olsen, L M ; Ozturk, M ; Vadstein, O ; Sakshaug, E ; Johnsen, G INTERACTIONS BETWEEN METABOLISM, GEOCHEMISTRY AND BACTERIAL DIVERSITY IN CULTURES OF THE MARINE DINOFLAGELLATE PROROCENTRUM MINIMUM

2:30 PM
Blankenship, R E ; Lince, M T ; Lang, A S ; Plumley, F G ; Overmann, J ; Van Dover, C L ; Beatty, J T A NEW PHOTOSYNTHETIC GREEN SULFUR BACTERIUM ISOLATED FROM DEEP-SEA HYDROTHERMAL VENTS

2:45 PM
Hofmann, G E USING MOLECULAR APPROACHES TO EXAMINE SPECIES’ PHYSIOLOGICAL RESPONSE TO CHANGES IN ENVIRONMENTAL TEMPERATURE

3:30 PM
Voznesensky, M ; Lenz, P H ; Spanings-Pierrot, C ; Towle, D W INDUCTION OF HEAT SHOCK PROTEIN 70 MRNA BY THERMAL STRESS IN CALANUS FINMARCHICUS

3:45 PM
Simoniello, C ; Torres, J J ; Somero, G N KINETIC PROPERTIES AND THERMAL STABILITIES OF A4_LACTATE DEHYDROGENASES OF MESOPELAGIC FISHES EVOLVED TO DIFFERENT THERMAL GRADIENTS

4:00 PM
Speekmann, C L ; Buskey, E J EFFECTS OF ENVIRONMENTAL CONDITIONS ON RNA:DNA RATIO ANALYSIS OF ZOOPLANKTON

4:15 PM
Puebla, O ; Sévigny, J M ; Sainte-Marie, B ; Bręthes, J C POPULATION GENETIC STRUCTURE OF THE SNOW CRAB (CHIONOECETES OPILIO) AT THE NORTHWEST ATLANTIC SCALE: A CASE OF HIGH MARINE CONNECTIVITY

4:30 PM
Dawson, M N PERIPATRIC SPECIATION AND EVOLUTIONARY RADIATION OF MASTIGIAS (SCYPHOZOA) IN MARINE LAKES DURING THE HOLOCENE: AN ISLAND BIOGEOGRAPHY FOR THE SEAS?

Date: Thursday, February 19, 2004

Location: 316 C

10:15 AM
Palenik, B ; Brahamsha, B ; McCarren, J ECOLOGICAL INSIGHTS FROM GENETICS AND GENOMICS

10:45 AM
Hess, W R ; Steglich, C ; Frankenberg, N THE MINIMAL GENOME FOR PHOTOSYNTHESIS: ON THE FUNCTION OF PHYCOERYTHRIN IN PROCHLOROCOCCUS

11:00 AM
Rocap, G ; McKay, J F ; Ahlgren, N A GENETIC DIVERSITY IN FIELD POPULATIONS OF PROCHLOROCOCCUS AND SYNECHOCOCCUS

11:15 AM
Zinser, E R ; Coe, A ; Johnson, Z ; Chisholm, S W A QUANTITATIVE PCR ASSESSMENT OF THE POPULATION STRUCTURE AND DYNAMICS OF THE MARINE CYANOBACTERIUM, PROCHLOROCOCCUS, IN THE NORTH ATLANTIC OCEAN

11:30 AM
Ahlgren, N A ; Hook, H E ; Rocap, G A NOVEL CLADE OF MARINE SYNECHOCOCCUS DEFICIENT IN NITRATE UTILIZATION

11:45 AM
Jenkins, B D ; Gibson, A ; Campbell, L ; Wilkerson, F P ; Zehr, J P DIVERSITY OF NITROGEN ASSIMILATION GENES IN NATURAL CYANOBACTERIAL POPULATIONS

1:30 PM
Proctor, L M ; Peglar, M COMPARISON OF N CYCLING GUILDS IN MICROBIAL BIOFILM COMMUNITIES FROM VEGETATED AND NONVEGETATED ESTUARINE ENVIRONMENTS.

1:45 PM
Church, M J ; Jenkins, B D ; Karl, D M ; Short, S M ; Omoregie, E O ; Zehr, J P DIVERSITY AND VERTICAL DISTRIBUTIONS OF NITROGEN-FIXING BACTERIA IN THE OLIGOTROPHIC NORTH PACIFIC OCEAN

2:00 PM
Short, S M ; Jenkins, B D ; Zehr, J P NITROGENASE GENE EXPRESSION IN THE CHESAPEAKE BAY

2:15 PM
Francis, C A ; Ward, B B DIVERSITY OF NITRITE REDUCTASE GENES IN THE WATER COLUMN OF PERMANENTLY ICE-COVERED LAKE BONNEY, ANTARCTICA

2:30 PM
Dyhrman, S T ; Webb, E A ; Orchard, E PHOSPHORUS SCAVENGING MECHANISMS IN TRICHODESMIUM

2:45 PM
Williams, H N ; Stine, O C ; Sahaniuk, G E ; Pineiro, S A DISTRIBUTION OF DIVERSE GENOTYPES OF HALOPHILIC BDELLOVIBRIONACEAE IN OCEANS, SEAS, ESTUARIES AND A SALT LAKE

3:30 PM
Lever, M A ; Teske, A VERTICAL DISTRIBUTION OF METHANOGEN COMMUNITIES IN ORGANIC-RICH SUBSURFACE SEDIMENTS OF THE PERU TRENCH

3:45 PM
Klepac-Ceraj, V ; Polz, M HIGH OVERALL DIVERSITY AND DOMINANCE OF MICRODIVERSITY AMONG CO-EXISTING SALT-MARSH SULFATE REDUCERS

4:00 PM
Lovejoy, C ; Massana, R ; Pedrós-Alió, C ; Carmack, E ; Vincent, W F MOLECULAR BIODIVERSITY OF PICO-EUKARYOTES IN THE ARCTIC OCEAN

4:15 PM
Wieneke, S G ; Armbrust, E V ; Olson, R J ; McGillicuddy, D J DIVERSITY OF EUKARYOTIC NANOPLANKTON IN SARGASSO SEA EDDIES

4:30 PM
Zhang, H ; Hou, Y ; Miranda, L ; Lin, S SPATIAL AND SEASONAL VARIATION IN DINOFLAGELLATE DIVERSITY IN LONG ISLAND SOUND ANALYZED WITH MITOCHONDRIAL CYTOCHROME B

Date: Friday, February 20, 2004

Location: 316 C

8:30 AM
Karl, D M A NOVEL, EMERGENT PARADIGM FOR THE ECOLOGY OF MARINE PICOPLANKTON

8:45 AM
Simu, K M ; Hagström, Ĺ F OLIGOTROPHIC BACTERIOPLANKTON WITH A NOVEL SINGLE-CELL LIFE STRATEGY.

9:00 AM
Kolber, Z S ; Haffa, A ; Koblizek, M ; Klimov, D EFFICIENCY OF PHOTOSYNTHETIC LIGHT UTILIZATION IN AEROBIC ANOXYGENIC PHOTOHETEROTROPHS (AAPS)

9:15 AM
Goericke, R THE ABUNDANCE AND DISTRIBUTION OF BACCHL A IN THE TEMPERATE, SUBTROPICAL AND TROPICAL PACIFIC.

9:30 AM
Waidner, L A ; Cottrell, M T ; Kirchman, D L UNIQUE ANOXYGENIC PHOTOSYNTHESIS GENES AND OPERONS IN UNCULTURED BACTERIA IN THE DELAWARE ESTUARY

10:15 AM
Sieracki, M E ; Gilg, I C ; Thier, E C ; Poulton, N J DISTRIBUTIONS OF AEROBIC, ANOXYGENIC PHOTOHETEROTROPHIC BACTERIA CELLS AND BIOMASS IN THE NORTHWEST ATLANTIC OCEAN

10:30 AM
Fuhrman, J A ; Hewson, I ; Schwalbach, M ; Brown, M TEMPORAL AND GEOGRAPHIC PATTERNS OF MARINE BACTERIAL COMMUNITY COMPOSITION

10:45 AM
Thompson, J R ; Randa, M A ; Marcelino, L A ; Tomita-Mitchell, A ; Lim, E ; Polz, M F DIVERSITY AND DYNAMICS OF A NORTH ATLANTIC COASTAL VIBRIO COMMUNITY

11:00 AM
Wommack, K E ; Chen, F DIVERSITY AND COMMUNITY COMPOSITION OF VIRIOPLANTKTON OVER AN ANNUAL BIOLOGIAL CYCLE OF THE CHESAPEAKE BAY.

11:15 AM
Malmstrom , R R ; Kiene, R P ; Cottrell, M T ; Kirchman, D L CONTRIBUTION OF SAR11 BACTERIA TO DISSOLVED ORGANIC MATTER FLUX IN THE NORTH ATLANTIC OCEAN

11:30 AM
Teira, E ; Herndl, G J UPTAKE OF D- VS. L- AMINO ACIDS BY THE MAIN PROKARYOTES IN THE MESO- AND BATHYPELAGIC WATERS OF THE NORTH ATLANTIC

11:45 AM
Evans, C T ; Van Mooy, B ; Keil, R G ; Greengrove, C ; Chin-Leo, G ISOLATION OF DNA FROM ACTIVELY GROWING HETEROTROPHIC BACTERIA USING 5-BROMO-2′-DEOXYURIDINE (BRDU)

Date: T,W,Th, February 17-19, 2004

Location: Kamehameha Hall III

11:45 AM
Dollhopf, S L ; Smith, A C ; Hunter, E ; Kostka, J E QUANTIFICATION OF SULFATE- AND IRON(III)-REDUCING BACTERIA WITH REVERSE TRANSCRIPTION REAL-TIME PCR IN BIOTURBATED AND NONBIOTURBATED SALTMARSH SEDIMENTS

11:45 AM
Shoemaker, D J ; von Dassow, P ; Latz, M I ; Moline, M A LIGHT AND TIME-SENSITIVE REGULATION OF BIOLUMINESCENCE IN THE DINOFLAGELLATE LINGULODINIUM POLYEDRUM.

11:45 AM
Cesar, D E ; Cottrell, M T ; Kirchman, D CARBON LIMITATION OF BACTERIAL PRODUCTION IN DELAWARE BAY

11:45 AM
Chistoserdov, A Y ; Madrid, V M ; Aller, J Y ; Aller, R C PHYLOGENETIC DIVERSITY OF RIBULOSE-1,5-BIPHOSPHATE CARBOXYLASE/OXYGENASE GENES OF MICROBIAL COMMUNITIES FROM MOBILE DELTAIC SEDIMENTS

11:45 AM
Madrid, V M ; Chistoserdov, A Y ; Aller, J Y ; Aller, R C DISSIMILATORY SULFATE REDUCTION POTENTIAL OF PROKARYOTIC COMMUNITIES FROM MOBILE DELTAIC SEDIMENTS

11:45 AM
Lin, S ; Mulholland, M ; Zhang, H ; Carpenter, E J MOLECULAR AND ECOLOGICAL CHARACTERIZATION OF THE PFIESTERIA-LIKE DINOFLAGELLATE CRYPTOPERIDINIOPSIS SP

11:45 AM
Soltysiak, K A ; Patton, J C ; Gold, J R ; Campbell, L MOLECULAR “FINGERPRINTS” USED TO IDENTIFY AND DIFFERENTIATE DINOFLAGELLATE SPECIES IN THE GULF OF MEXICO

11:45 AM
Longnecker, K ; Homen, D S ; Sherr, B F ; Sherr, E B USING MICROFISH TO IDENTIFY BIOSYNTHETICALLY METABOLICALLY ACTIVE BACTERIOPLANKTON IN THE OREGON UPWELLING SYSTEM

11:45 AM
Kellogg, C A ; Stone, R P A PILOT STUDY OF DEEP WATER CORAL MICROBIAL ECOLOGY

11:45 AM
Pascale, M ; Worden, A Z ; Zehr, J P A PEPTIDE NUCLEIC ACID (PNA)-BASED FLUORESCENT IN SITU HYBRIDIZATION METHOD FOR WHOLE CELL DETECTION OF CROCOSPHAERA SP. (SYNECHOCYSTIS SP.) WH8501

11:45 AM
Yu, Y ; Rohwer, F FASTGROUP II: A WEB-BASED BIOINFORMATICS PLATFORM FOR ANALYSES OF LARGE 16S RDNA LIBRARIES

11:45 AM
Pace, D A ; Ginsburg, D W ; Manahan, D T MOLECULAR PHYSIOLOGICAL BASES OF HIGH GROWTH EFFICIENCY IN INVERTEBRATE LARVAE FROM COLD ENVIRONMENTS

11:45 AM
Ginsburg, D W ; Manahan, D T NUTRITIONAL STATUS OF INVERTEBRATE LARVAE IN THE OCEAN

11:45 AM
Jeffrey, W H ; Meador, J D ; Pakulski, J D ; Douki, T A ; Baldwin, A J ; Mitchell, D L SOLAR INDUCED DNA PHOTOPRODUCTS ACROSS A LATITUDINAL GRADIENT IN THE EASTERN PACIFIC OCEAN

11:45 AM
Bibby, T S ; Mary, I ; Nield, J ; Partensky, F ; Barber, J LOW-LIGHT-ADAPTED PROCHLOROCOCCUS SPECIES POSSESS SPECIFIC ANTENNA FOR EACH PHOTOSYSTEM

11:45 AM
Collier, J L ; Baker, K M UREA-DEGRADING MICROORGANISMS IN CHESAPEAKE BAY

11:45 AM
McFadden, M A ; Cowles, D L BLOOD AND TISSUE CHARACTERISTICS OF HEMISQUILLA CALIFORNIENSIS (CRUSTACEA: STOMATOPODA), A BURROW-DWELLING MANTIS SHRIMP WHICH ROUTINELY ENCOUNTERS HYPOXIA

11:45 AM
Dantzler, M M ; Kemp, P F ; Aller, J Y ; Dhadwal, H S ADVANCEMENTS IN THE USE OF A NUCLEIC ACID HYBRIDIZATION BASED CAPILLARY WAVEGUIDE BIOSENSOR FOR MARINE MICROBIAL PROCESS STUDIES

11:45 AM
Erdner, D L ; Anderson, D M GLOBAL GENE EXPRESSION ANALYSIS OF NITROGEN AND PHOSPHORUS STRESS IN THE TOXIC DINOFLAGELLATE ALEXANDRIUM FUNDYENSE

11:45 AM
Miranda, L N ; Zhang, H ; Hargraves, P ; Lin, S PHYTOPLANKTON DIVERSITY ALONG THE EASTERN-WESTERN NUTRIENT GRADIENT IN LONG ISLAND SOUND: TAXONOMIC AND PHYLOGENETIC APPROACHES

11:45 AM
Green, A J ; Manahan, D T HIGH GROWTH EFFICIENCIES IN ANTARCTIC LARVAE

11:45 AM
Yu, P C ; Moran, A L ; Manahan, D T GENETIC VARIATION IN SURVIVAL AND GROWTH RECOVERY FOLLOWING PROLONGED STARVATION OF INVERTEBRATE LARVAE

11:45 AM
Lam, P ; Cowen, J P ; Jones, R D ; Popp, B N ; Teske, A MOLECULAR ANALYSES OF AUTOTROPHIC AMMONIA-OXIDIZING BACTERIA IN DEEP-SEA HYDROTHERMAL VENTS ENVIRONMENTS

11:45 AM
Hagman, K ; Simu, K ; Riemann, L ; Hagström, Ĺ OPTIMIZATION OF DNA EXTRACTION FOR QUANTITATIVE MARINE BACTERIOPLANKTON COMMUNITY ANALYSIS.

11:45 AM
Simu Karin, M ; Hahström Ĺke, F K ABUNDANT SLOW GROWING OLIGOTROPHIC BACTERIOPLANKTON SHOW LOW VIABILITY IN DILUTION CULTURES

11:45 AM
Lauer, A ; Teske, A ARCHAEAL DIVERSITY IN A DEEP SEA SEDIMENT OF THE AEQUATORIAL PACIFIC OCEAN BASED ON 16S RDNA ANALYSES

11:45 AM
Wolfe, F L ; Schofield, O M ; Falkowski, P G THE DIVERSE MOLECULAR EVOLUTION OF IRON AND MANGANESE SUPEROXIDE DISMUTASES IN OXYGENIC PHOTOAUTOTROPHS

11:45 AM
Sorensen, K B ; Teske, A ARCHAEAL PHYLOTYPES IN A METAL-RICH, LOW-ACTIVITY DEEP SUBSURFACE SEDIMENT OF THE PERU BASIN (ODP LEG 201, SITE 1231)

11:45 AM
Horak, R E ; Forsyth, M H ; Van Dover, C L LIGHT PRODUCTION BY SULFIDE-OXIDIZING BACTERIA? A POSSIBLE LIGHT SOURCE FOR CHLOROPLAST-SEQUESTERING FORAMINIFERANS

11:45 AM
Wisniewski, R J ; Dyhrman, S T ; Moffett, J W THE EFFECT OF METAL SUPPLY ON ALKALINE PHOSPHATASE ACTIVITY IN CULTURES OF EMILIANIA HUXLEYI

11:45 AM
Flores, J F ; Carney, S L ; Schaeffer, S W ; Fisher, C R PHYSIOLOGICAL AND GENETIC CHARACTERIZATION OF HEMOGLOBIN IN A PHENOTYPICALLY PLASTIC HYDROTHERMAL VENT TUBEWORM

11:45 AM
Jiao, N Z ; Zhang, Y DYNAMICS OF AEROBIC ANOXYENIC PHOTOTROPHIC BACTERIA IN THE EAST CHINA SEA

11:45 AM
Brown, M V ; Fuhrman, J A TRACKING TEMPORAL PATTERNS OF MOLECULAR BIODIVERSITY, MICRODIVERSITY AND COMMUNITY STRUCTURE AT VARIOUS DEPTHS IN THE SAN PEDRO CHANNEL, CALIFORNIA.

11:45 AM
Manahan, D T ; Meyer, E ; Haag, A ; Von Dippe, P ; Hedgecock, D GENOMIC STUDY OF THE PHYSIOLOGICAL BASES OF DIFFERENTIAL GROWTH IN INVERTEBRATE LARVAE

11:45 AM
Moore, M ; Manahan, D T LIPID METABOLISM IN INVERTEBRATE LARVAE: ISSUES WITH ACCURACY AND INTERPRETAIONS

11:45 AM
Thamatrakoln, K ; Hildebrand, M ISOLATING NEW SILICIC ACID TRANSPORTERS FROM DIATOMS FOR COMPARATIVE SEQUENCE ANALYSIS

11:45 AM
Robidart, J C ; Campbell, B J ; Cary, S C ; Felbeck, H TEMPERATURE TOLERANCE OF THE UNCULTURED SYMBIOTIC COMMUNITY OF THE VENT POLYCHAETE, ALVINELLA POMPEJANA, AS INFERRED FROM STABILITIES OF MALATE DEHYDROGENASES

11:45 AM
Haffa, A L ; Klimov, D ; Kolber, Z DEVELOPMENT OF AN OXYGEN SENSOR BASED ON QUENCHING OF PORPHYRIN PHOSPHORESCENCE

11:45 AM
Hou, Y ; Lin, S ANALYSIS OF DIFFERENTIALLY EXPRESSED PROTEINS IN PFIESTERIA PISCICIDA IN SEARCH OF GROWTH-RELATED PROTEINS

11:45 AM
Tartarotti, B ; Torres, J J INDUCTION OF STRESS PROTEINS IN THE COPEPOD ACARTIA TONSA

11:45 AM
Robertson, D L ; Gershenovich, M GLUTAMINE SYNTHETASE ISOENZYME EXPRESSION IN THE MARINE DIATOM SKELETONEMA COSTATUM

11:45 AM
Murphy, J L ; Savill, M G ; Sobsey, M D COMPARISON OF STANDARD AND MOLECULAR METHODS FOR CAMPYLOBACTER IDENTIFICATION AND ENVIRONMENTAL SOURCE IDENTIFICATION

11:45 AM
Huang, B Q ; Chen, J X ; Jiao, N Z ; Hong, J S ; Chen, F FLUORESCENT IN SITU HYBRIDIZATION WITH OLIGONUCLEOTIDE PROBES TO IDENTIFY ALEXANDRIUM TAMARENSE AND GENUS ALEXANDRIUM

11:45 AM
Short, C M ; Church, M J ; Montoya, J P ; Zehr, J P TEMPORAL VARIABILITY IN NITROGENASE GENE (NIFH) EXPRESSION IN THE SUPTROPICAL NORTH PACIFIC OCEAN

11:45 AM
Poulton, N J ; Gilg, I C ; Thier, E C ; Sieracki, M E DISCRIMINATION BETWEEN CTC-ACTIVE BACTERIA AND PROCHLOROCOCCUS FROM NATURAL SAMPLES USING DUAL BEAM FLOW CYTOMETRY

11:45 AM
Clarke , M A ; Balkwill, D ; Gragg, R COMPARING IMPACT OF PHOTOOXIDIZED AND UNPHOTOOXIDIZED PETROLEUM ON MARINE BACTERIA COMMUNITIES USING TERMINAL RESTRICTION FRAGMENT LENGTH POLYMORPHISM

11:45 AM
Chin-Leo, G ; Keil, R G ; Greengrove, C ; Evans, C T BACTERIOPLANKTON DYNAMICS IN INTERMITTENTLY ANOXIC FJORDS OF VANCOUVER ISLAND, BRITISH COLUMBIA

11:45 AM
Gobler, C J ; Pererya, G ; Downes-Gastrich, M ; Anderson, O R ; Wilhelm, S W CHARACTERIZATION OF VIRUSES ISOLATED FROM NEW YORK ESTUARIES CAPABLE OF LYSING THE HARMFUL BROWN TIDE ALGA, AUREOCOCCUS ANOPHAGEFFERENS

 
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