Table of Contents, Volume 6, 2008

January

Peter J. le B. Williams,Dominique Lefèvre
An assessment of the measurement of phytoplankton respiration rates from dark 14C incubations
2008, 6:1-11
Abstract | PDF (Open Access)

Sybill Jaschinski, Thomas Hansen, Ulrich Sommer
Effects of acidification in multiple stable isotope analyses
2008, 6:12-15
Abstract | PDF (Open Access)

Tom Jilbert, Gert de Lange, Gert-Jan Reichart
Fluid displacive resin embedding of laminated sediments: preserving trace metals for high-resolution paleoclimate investigations
2008, 6:16-22
Abstract | PDF (Open Access)

Stefan Sommer, Matthias Türk, Sonja Kriwanek,Olaf Pfannkuche
Gas exchange system for extended in situ benthic chamber flux measurements under controlled oxygen conditions: First application - Sea bed methane emission measurements at Captain Arutyunov mud volcano
2008, 6:23-33
Abstract | PDF (Open Access)

Aileen C. Mill, Christopher Sweeting, Carolyn Barnes, Saoud Al-Habsi and M. Aaron MacNeil
Mass-spectrometer bias in stable isotope ecology
2008, 6:34-39
Abstract | PDF (Open Access)

Samuel R. Laney and Ricardo M. Letelier
Artifacts in measurements of chlorophyll fluorescence transients, with specific application to fast repetition rate fluorometry
2008, 6:40-50
Abstract | PDF (Open Access)

Jérôme Marty, Dolors Planas
A comparison of methods to determine algal d13C in freshwater
2008, 6:51-63
Abstract | PDF (Open Access)

Eleni Anagnostou and Robert M. Sherrell
A MAGIC method for sub-nanomolar orthophosphate determination in freshwater
2008, 6:64-74
Abstract | PDF (Open Access)

Xavier D. Quintana, Sandra Brucet, Dani Boix, Rocío López-Flores, Stéphanie Gascón, Anna Badosa, Jordi Sala, Ramon Moreno-Amich,Juan J. Egozcue
A non-parametric method for the measurement of size diversity, with emphasis on data standardisation
2008, 6:75-86
Abstract | PDF | Appendix A  B (Open Access)

Matthew T. Brown and Kenneth W. Bruland
An improved flow injection analysis method for the determination of dissolved aluminum in seawater
2008, 6:87-95
Abstract | PDF (Open Access)

February

W.A.M. Nimmo Smith
A submersible three-dimensional Particle Tracking Velocimetry system for flow visualization in the coastal ocean
2008, 6:96-104
Abstract | PDF (Open Access)

I. Ostrovsky, D. F. McGinnis, L. Lapidus, W. Eckert
Quantifying gas ebullition with echosounder: the role of methane transport by bubbles in a medium-sized lake
2008, 6:105-118
Abstract | PDF (Open Access)

Francis J. Sansone, Heather L. Spalding, and Celia M. Smith
Submersible-operated porewater sampler for permeable sediments
2008, 6:119-125
Abstract | PDF (Open Access)

Robert K. Cowen and Cedric M. Guigand
In situ Ichthyoplankton Imaging System (ISIIS): system design and preliminary results
2008, 6:126-132
Abstract | PDF (Open Access)

March

Ole A. Mikkelsen, Timothy G. Milligan, Paul S. Hill, Robert J. Chant, Colin F. Jago, 6 Sarah E. Jones, Vladimir Krivtsov, Gay Mitchelson-Jacob
The influence of schlieren on in situ optical 2 measurements used for particle characterization
2008, 6:133-143
Abstract | PDF (Open Access)

Assaf Zvuloni, Yael Artzy-Randrup, Lewi Stone, Robert van Woesik and Yossi Loya
Ecological size-frequency distributions: how to prevent and correct biases in spatial sampling
2008, 6:144-153
Abstract | PDF (Open Access)

Erich Rienecker, John Ryan, Marguerite Blum, Caroline Dietz, Luke Coletti, Roman Marin III, W. Paul Bissett
Mapping phytoplankton in situ using a laser scattering sensor
2008, 6:153-161
Abstract | PDF (Open Access)

April

Kakani Katija and John O. Dabiri
In situ field measurements of aquatic animal fluid interactions using a Self-Contained Underwater Velocimetry Apparatus (SCUVA)
2008, 6:162-171
Abstract | PDF (Open Access)

Neil L. Rose
Quality control in the analysis of lake sediments for spheroidal carbonaceous particles
2008, 6:172-179
Abstract | PDF (Open Access)

Maciej Sosna, Guy Denuault, Robin W. Pascal, Ralf D. Prien and Matt Mowlem
Field assessment of a new membrane-free microelectrode dissolved oxygen sensor for water column profiling
2008, 6:180-189
Abstract | PDF (Open Access)

May

Karel Van den Meersche, Karline Soetaert, Jack J. Middelburg
A Bayesian Compositional Estimator for microbial taxonomy based on biomarkers
2008, 6:190-199
Abstract | PDF (Open Access)

H.Wolfgang Riss, Elisabeth I. Meyer, and Olaf Niepagenkemper
A novel and robust device for repeated small-scale oxygen measurement in riverine sediments - implications for advanced environmental surveys
2008, 6:200-207
Abstract | PDF (Open Access)

June

Ja-Myung Kim, Kyoungsoon Shin, Kitack Lee, Byong-Kwon Park
In situ ecosystem-based carbon dioxide perturbation experiments: Design and performance evaluation of a mesocosm facility
2008, 6:208-217
Abstract | PDF (Open Access)

Javier Montero-Pau, Africa Gómez,Joaquín Muñoz
Application of an inexpensive and high-throughput genomic DNA extraction method for the molecular ecology of zooplanktonic diapausing eggs
2008, 6:218-222
Abstract | PDF (Open Access)

Jordie J.C. Netten, Egbert H. van Nes, Marten Scheffer, and Rudi M.M. Roijackers
Use of open-top chambers to study the effect of climate change in aquatic ecosystems
2008, 6:223-229
Abstract | PDF (Open Access)

Thorsten Dittmar, Boris Koch, Norbert Hertkorn, and Gerhard Kattner
A simple and efficient method for the solid-phase extraction of dissolved organic matter (SPE-DOM) from seawater
2008, 6:230-235
Abstract | PDF (Open Access)

Jens Kallmeyer, David C. Smith, Arthur J. Spivack, Steven D'Hondt
New cell extraction procedure applied to deep subsurface sediments
2008, 6:236-245
Abstract | PDF (Open Access)

Rachel L. Sleighter, Georgina A. McKee, Zhanfei Liu, and Patrick G. Hatcher
Naturally present fatty acids as internal calibrants for Fourier transform mass spectra of dissolved organic matter
2008, 6:246-253
Abstract | PDF (Open Access)

Tomoko Komada, Mark R. Anderson, and Corin L. Dorfmeier
Carbonate removal from coastal sediments for the determination of organic carbon and its isotopic signatures, δ13C and Δ14C: comparison of fumigation and direct acidification by hydrochloric acid
2008, 6:254-262
Abstract | PDF (Open Access)

July

Hans W. Jannasch, Luke J. Coletti, Kenneth S. Johnson, Stephen E. Fitzwater, Joseph A. Needoba, and Joshua N. Plant
The Land/Ocean Biogeochemical Observatory: A robust networked mooring system for continuously monitoring complex biogeochemical cycles in estuaries
2008, 6:263-276
Abstract | PDF (Open Access)

Hassler Christel S., Michael R. Twiss, Dana F. Simon, Kevin J. Wilkinson
Porous Underwater Chamber (PUC) for in-situ determination of nutrient and pollutant bioavailability to microorganisms
2008, 6:277-287
Abstract | PDF (Open Access)

H. Hemond, J. Cheung, A. Mueller, J. Wong, M. Hemond, D. Mueller, J. Eskesen
The NEREUS In-lake Wireless/Acoustic Chemical Data network
2008, 6:288-298
Abstract | PDF (Open Access)

Gareth O. Andrews, Stephen Simpson and Adele J. Pile
A new method for presenting nutritionally defined food sources to marine organisms
2008, 6:299-306
Abstract | PDF (Open Access)

Thomas Soltwedel, Bruno Lansard, Franck Gilbert, Christiane Hasemann, Elanor Bell, Burkhard Sablotny, Matthew Eagle, Peter Kershaw, and Christophe Rabouille
An "Integrated Sediment Disturber" (ISD) to study the impact of repeated physical perturbations on sediment geochemistry and the small benthic biota
2008, 6:307-318
Abstract | PDF (Open Access)

Qian P. Li, and Dennis A. Hansell, Jia-Zhong Zhang
Underway monitoring of nanomolar nitrate plus nitrite and phosphate in oligotrophic seawater
2008, 6:319-326
Abstract | PDF (Open Access)

M.R. Heupel, K.L. Reiss, B.G. Yeiser and C.A. Simpfendorfer
Effects of biofouling on performance of moored data logging acoustic receivers
2008, 6:327-335
Abstract | PDF (Open Access)

Holm, Christopher, Zanna Chase, Hans Jannasch, and Kenneth Johnson
Development and initial deployments of an autonomous in-situ instrument for long-term monitoring of copper (II) in the marine environment
2008, 6:336-346
Abstract | PDF (Open Access)

August

Pertti Hari, Jukka Pumpanen, Jussi Huotari, Pasi Kolari, John Grace, Timo Vesala and Anne Ojala
High-frequency measurements of photosynthesis of planktonic algae using rugged nondispersive infrared carbon dioxide probes
2008, 6:347-354
Abstract | PDF (Open Access)

Larsen, A., T. Tanaka, M.V. Zubkov, and F. Thingstad
Two approaches for P-uptake measurements of specific osmotroph populations using cell-sorting flow cytometry - benefits and limitations
2008, 6:355-363
Abstract | PDF (Open Access)

Nicholas R. Record, Andrew J. Pershing
Modeling zooplankton development using the monotonic upstream scheme for conservation laws
2008, 6:364-373
Abstract | PDF | Appendix A  B (Open Access)

Lubos Polerecky, Christian Lott, Miriam Weber
In situ measurement of gross photosynthesis using a microsensor-based light-shade shift method
2008, 6:373-383
Abstract | PDF (Open Access)

September

C.I. Measures, W.M. Landing, M.T. Brown and C.S. Buck
A commercially available rosette system for trace metal clean sampling
2008, 6:384-394
Abstract | PDF (Open Access)

R.W. Buddemeier, P.L. Jokiel, K.M. Zimmerman, D.R. Lane, J. M. Carey, G.C. Bohling, J.A. Martinich
A modeling tool to evaluate regional coral reef responses to changes in climate and ocean chemistry
2008, 6:395-411
Abstract | PDF (Open Access)

Florian Leese, Christoph Mayer, and Christoph Held
Isolation of microsatellites from unknown genomes using known genomes as enrichment templates
2008, 6:412-426
Abstract | PDF (Open Access)

Natalya Yutin, Oded Béjà,Marcelino T. Suzuki
The use of denaturing gradient gel electrophoresis with fully-degenerate pufM primers to monitor aerobic anoxygenic phototrophic assemblages
2008, 6:427-440
Abstract | PDF (Open Access)

Emily M. White, David J. Kieber, Kenneth Mopper
Determination of photochemically produced carbon dioxide in seawater
2008, 6:441-453
Abstract | PDF (Open Access)

Paul C. Hanson, Stephen R. Carpenter, Nobuaki Kimura, Chin Wu, Sean P. Cornelius, Timothy K. Kratz
Evaluation of metabolism models for free-water dissolved oxygen methods in lakes
2008, 6:454-465
Abstract | PDF (Open Access)

Paulo Cartaxana,João Serôdio
Inhibiting diatom motility: a new tool for the study of the photophysiology of intertidal microphytobenthic biofilms
2008, 6:466-476
Abstract | PDF (Open Access)

J.R. Seymour, T. Ahmed, Marcos, R. Stocker
A microfluidic chemotaxis assay to study microbial behavior in diffusing nutrient patches
2008, 6:477-488
Abstract | PDF (Open Access)

Rich Pawlowicz
Calculating the conductivity of natural waters
2008, 6:489-501
Abstract | PDF (Open Access)

October

David Robertson, Peter R. Teasdale, David T. Welsh
A novel gel-based technique for the high resolution, two-dimensional determination of iron (II) and sulfide in sediment
2008, 6:502-512
Abstract | PDF (Open Access)

Baik-Ho Kim, Soon-Jin Hwang and Myung-Soo Han
In situ bacterial mitigation of the toxic cyanobacterium Microcystis aeruginosa: implications for biological bloom control
2008, 6:513-522
Abstract | PDF (Open Access)

Christian Schlechtriem, R. James Henderson and Douglas R. Tocher
A critical assessment of different transmethylation procedures commonly employed in the fatty acid analysis of aquatic organisms
2008, 6:523-531
Abstract | PDF (Open Access)

Dirk de Beer, Andrew Bissett, Rutger de Wit, Henk Jonkers, Stefanie Köhler-Rink, Hakyun Nam, Byeong Hyo Kim, Gabriele Eickert, Mor Grinstain
A microsensor for carbonate ions suitable for microprofiling in freshwater and saline environments
2008, 6:532-541
Abstract | PDF (Open Access)

Peter T. Doran, Christian H. Fritsen, Alison E. Murray, Fabien Kenig, Chris P. McKay, and Jay D. Kyne
Entry approach into pristine ice-sealed lakes - Lake Vida, East Antarctica, a model ecosystem
2008, 6:542-547
Abstract | PDF (Open Access)

November

Ki-Tae Park and Kitack Lee
High-frequency, accurate measurement of dimethylsulfide in surface marine environments using a microporous membrane contactor
2008, 6:548-557
Abstract | PDF (Open Access)

Sara Ferrón, Fernando Alonso-Pérez, Carmen G. Castro, Teodora Ortega, Fiz F. Pérez, Aída F. Ríos, Abelardo Gómez-Parra, Jesús M. Forja
Hydrodynamic characterization and performance of an autonomous benthic chamber for use in coastal systems
2008, 6:558-571
Abstract | PDF (Open Access)

Colin A. Stedmon and Rasmus Bro
Characterizing dissolved organic matter fluorescence with parallel factor analysis: a tutorial
2008, 6:572-579
Abstract | PDF | Appendix (Open Access)

João Canning-Clode, Nelson Valdivia, Markus Molis, Jeremy C. Thomason, Martin Wahl
Estimation of regional richness in marine benthic communities: quantifying the error
2008, 6:580-590
Abstract | PDF (Open Access)

Alexander Chekalyuk and Mark Hafez
Advanced laser fluorometry of natural aquatic environments
2008, 6:591-609
Abstract | PDF | Appendix (Open Access)

L. J. de Nooijer, T. Toyofuku, K. Oguri, H. Nomaki, and H. Kitazato
Intracellular pH distribution in foraminifera determined by the fluorescent probe HPTS
2008, 6:610-618
Abstract | PDF (Open Access)

Masahiro Suzumura
Persulfate chemical wet oxidation method for the determination of particulate phosphorus in comparison with a high-temperature dry combustion method
2008, 6:619-629
Abstract | PDF (Open Access)

Christian Schlosser and Peter L. Croot
Application of cross-flow filtration for determining the solubility of iron species in open ocean seawater
2008, 6:630-642
Abstract | PDF (Open Access)

December

Cástor Guisande, Aldo Barreiro, Alberto Acuña, Lili J. Marciales, Esnedy Hernández, Angélica M. Torres, Nelson Aranguren, Willian López, Santiago R. Duque, Lina J. Gallo, Néstor Aguirre, Marta Mogollón, Jaime Palacio, Guillermo Rueda-Delgado
Testing of the CHEMTAX program in contrasting Neotropical lakes, lagoons and swamps
2008, 6:643-652
Abstract | PDF (Open Access)

K.M. Orcutt, K. Gundersen, M.L. Wells, N. Poulton, M.E. Sieracki, G.J. Smith
Lighting up phytoplankton cells with quantum dots
2008, 653-658
Abstract | PDF (Open Access)

Moira Llabrés, Susana Agustí
Extending the cell digestion assay to quantify dead phytoplankton cells in cold and polar waters
2008, 6:659-666
Abstract | PDF (Open Access)

Dianne, Greenfield, Roman Marin, Gregory Doucette, Christina Mikulski, Kelly Jones, Scott Jensen, Brent Roman, Nilo Alvarado, Jason Feldman, Chris Scholin
Field applications of the second-generation Environmental Sample Processor (ESP) for remote detection of harmful algae: 2006-2007
2008, 6:667-679
Abstract | PDF (Open Access)

Please Note

Articles are added to the Table of Contents throughout the year. The month of publication is shown as a convenient guide to locating the most recent articles. Open Access articles are freely available for download. Other articles require an institutional or individual subscription.

Quicklinks

Volume 1, 2003
Volume 2, 2004
Volume 3, 2005
Volume 4, 2006
Volume 5, 2007
Volume 6, 2008
Volume 7, 2009
Volume 8, 2010
Volume 9, 2011
Volume 10, 2012
Volume 11, 2013
Volume 12, 2014
Intercalibration Special Issue