Table of Contents, Volume 4, 2006


Gorokhova, Elena
Molecular identification of the invasive cladoceran Cercopagis pengoi (Cladocera: Onychopoda) in stomachs of predators
2006, 4:1-6
Abstract | PDF (Open Access)


Anders Tengberg, Jostein Hovdenes, Henrik Johan Andersson, Olivier Brocandel, Robert Diaz, David Hebert, Tony Arnerich, Christian Huber, Arne Körtzinger, Alexis Khripounoff, Francisco Rey, Christer Rönning, Jens Schimanski, Stefan Sommer, and Achim Stangelmayer
Evaluation of a lifetime-based optode to measure oxygen in aquatic systems
2006, 4:7-17
Abstract | PDF | Appendix (Open Access)

Andrew S. Brierley, Ryan A. Saunders, Douglas G. Bone, Eugene J. Murphy, Peter Enderlein, Stéphane G. Conti, and David A. Demer
Use of moored acoustic instruments to measure short-term variability in abundance of Antarctic krill
2006, 4:18-29
Abstract | PDF (Open Access)

Adrian Patterson, Robert Kennedy, Ronan O'Reilly, and Brendan F. Keegan
Field test of a novel, low-cost, scanner-based sediment profile imaging camera
2006, 4:30-37
Abstract | PDF (Open Access)

Mathieu Cusson, Jean-Francois Plante, and Christian Genest
The effect of different sampling designs and methods on the estimation of secondary production: A simulation
2006, 4:38-48
Abstract | PDF | Appendix (Open Access)


Andrew Sutherland
A simple reciprocating apparatus for maintaining long-term turbidity in biological experiments
2005, 4:49-57
Abstract | PDF (Open Access)

Derek A Fong, Nicole L Jones
Evaluation of AUV-based ADCP measurements
2005, 4:58-67
Abstract | PDF (Open Access)


James L Falter, Marlin J Atkinson, James H Fleming, Melissa M Bos, Ryan J Lowe, Jeffrey R Koseff, Stephen G Monismith
A new mesocosm for simulating the effects of wave- and tide-driven water motion on the biogeochemistry of benthic reef communities
2005, 4:68-79
Abstract | PDF (Open Access)

Ronald P. Kiene and Doris Slezak
Low dissolved DMSP concentrations in seawater revealed by small volume gravity filtration and dialysis sampling
2006, 4:80-95
Abstract | PDF (Open Access)

Jim M Hood, Sandy Brovald, Robert W Sterner, Manuel Villar-Argaiz, Kyle D Zimmer
Near-infrared spectrometry (NIRS) for the analysis of seston carbon, nitrogen, and phosphorus from diverse sources
2006, 4:96-104
Abstract | PDF (Open Access)

Ana M. Aguilar-Islas, Joseph A. Resing, and Kenneth W. Bruland
Catalytically enhanced spectrophotometric determination of manganese in seawater by flow-injection analysis with a commercially available resin for on-line preconcentration
2006, 4:105-113
Abstract | PDF (Open Access)

Brian N. Popp, Robert R. Bidigare, Bryan Deschenes, Edward A. Laws, Fredrick G. Prahl, Jamie K. Tanimoto and Richard Wallsgrove
A new method for estimating growth rates of alkenone-producing haptophytes
2006, 4:114-129
Abstract | PDF (Open Access)


I. C. Bobsien and H. Brendelberger
Comparison of an enclosure drop trap and a visual diving census technique to estimate fish populations in eelgrass habitats
2006, 4:130-141
Abstract | PDF (Open Access)

Mark Trimmer, Ian A Sanders
In-situ application of the 15NO3- isotope pairing technique to measure denitrification in sediments at the surface water - groundwater interface
2006, 4:142-152
Abstract | PDF (Open Access)

Elaine M. Caldarone, Catriona M. Clemmesen, Elisa Berdalet, Thomas J. Miller, Arild Folkvord, G. Joan Holt, M. Pilar Olivar, and Iain M. Suthers
Intercalibration of four spectrofluorometric protocols for measuring RNA/DNA ratios in larval and juvenile fish
2006, 4:153-163
Abstract | PDF (Open Access)


Maeve C. Lohan, Ana M. Aguilar-Islas, Kenneth W. Bruland
Direct determination of iron in acidified (pH 1.7) seawater samples by flow injection analysis with catalytic spectrophotometric detection: Application and intercomparison
2006, 4:164-171
Abstract | PDF (Open Access)

Jaye E. Cable, Jonathan B. Martin and John Jaeger
Exonerating Bernoulli? On evaluating the physical and biological processes affecting marine seepage meter measurements
2006, 4:172-183
Abstract | PDF (Open Access)

David I. Kline, John Bryant, Eddie Kisflaudy, Gary Rohwer, Fernando Nostropaur, Jodi Grayson, Nancy Knowlton, and Forest Rohwer
The aquatic automated dosing and maintenance system (AADAMS)
2006, 4:184-192
Abstract | PDF (Open Access)

Sara M. Handy, David A Hutchins, S. Craig Cary and Kathryn J. Coyne
Simultaneous enumeration of multiple raphidophyte species by quantitative real-time PCR: capabilities and limitations
2006, 4:193-204
Abstract | PDF (Open Access)


Julie Granger, Daniel M. Sigman, Maria G. Prokopenko, Moritz F. Lehmann, Philippe D. Tortell
A method for nitrite removal in nitrate N and O isotope analyses
2006, 4:205-212
Abstract | PDF (Open Access)

James H. McCutchan, Jr., William M. Lewis, Jr.
Groundwater flux and open-channel estimation of stream metabolism: response to Hall and Tank
2006, 4:213-215
Abstract | PDF (Open Access)

Steven Bouillon, Michael Korntheuer, Willy Baeyens, and Frank Dehairs
A new automated setup for stable isotope analysis of dissolved organic carbon
2006, 4:216-226
Abstract | PDF (Open Access)

T. Ka'eo Duarte, Harold F. Hemond, Donald Frankel, Sheila Frankel
Assessment of submarine groundwater discharge by handheld aerial infrared imagery: case study of Kaloko fishpond and bay, Hawai`i
2006, 4:227-236
Abstract | PDF (Open Access)

Aurea M. Ciotti and Annick Bricaud
Retrievals of a size parameter for phytoplankton and spectral light absorption by colored detrital matter from water-leaving radiances at SeaWiFS channels in a continental shelf region off Brazil
2006, 4:237-253
Abstract | PDF | Appendix (Open Access)

Fred W. Leaney and Andrew L. Herczeg
A rapid field extraction method for determination of radon-222 in natural waters by liquid scintillation counting
2006, 4:254-259
Abstract | PDF (Open Access)

Laurent Seuront, Dominique Menu
A pneumatically-operated, submersible, three-dimensional water sampler for microscale studies
2006, 4:260-267
Abstract | PDF (Open Access)

Sebastien Rauch, Harold F. Hemond and Daniel J. Brabander
High spatial resolution analysis of lake sediment cores by laser ablationinductively coupled plasma-mass spectrometry (LA-ICP-MS)
2006, 4:268-274
Abstract | PDF (Open Access)


Ingeborg Bussmann and Bernhard Schink
A modified diffusion-based methane sensor and its application in freshwater sediment
2006, 4:275-283
Abstract | PDF (Open Access)

R. Filgueira, U. Labarta, M. J. Fernandez-Reiriz
Flow-through chamber method for clearance rate measurements in bivalves: design and validation of individual chambers and mesocosm
2006, 4:284-292
Abstract | PDF (Open Access)

Karl Kaiser and Ronald Benner
Erratum: Hydrolysis-induced racemization of amino acids
2006, 4:293
PDF (Open Access)


Perran L. M. Cook, Frank Wenzhöfer, Søren Rysgaard, Oleksiy S. Galaktionov, Filip J. R. Meysman, Bradley D. Eyre, Jeffrey Cornwell, Markus Huettel, Ronnie N. Glud
Quantification of denitrification in permeable sediments: Insights from a two-dimensional simulation analysis and experimental data
2006, 4:294-307
Abstract | PDF (Open Access)

Matthew P. Hoch, Richard A. Snyder, Wade H. Jeffrey, Kevin S. Dillon, and Richard B. Coffin
Expression of glutamine synthetase and glutamate dehydrogenase by marine bacterioplankton: Assay optimizations and efficacy for assessing nitrogen to carbon metabolic balance in situ
2006, 4:308-328
Abstract | PDF (Open Access)

Katherine R. O'Brien, Anya M. Waite, Bridget L. Alexander, Karen A. Perry, Luis E. Neumann
Particle-tracking in a salinity gradient: a method for measuring sinking rate of individual phytoplankton in the laboratory
2006, 4:329-335
Abstract | PDF (Open Access)


H. Stahl, A. Glud, C.R. Schrõder, I. Klimant, A. Tengberg and R.N. Glud
Time-resolved pH imaging in marine sediments with a luminescent planar optode
2006, 4:336-345
Abstract | PDF (Open Access)

Verena Heuer, Marcus Elvert, Stefanie Tille, Michael Krummen, Xavier Prieto Mollar, Laura R. Hmelo, and Kai-Uwe Hinrichs
Online d13C analysis of volatile fatty acids in sediment/porewater systems by liquid chromatography-isotope ratio-mass spectrometry
2006, 4:346-357
Abstract | PDF (Open Access)

Thomas Reinthaler, Karel Bakker, Rinus Manuels, Jan van Ooijen and Gerhard J. Herndl
Fully automated spectrophotometric approach to determine oxygen concentrations in seawater via continuous-flow analysis
2006, 4:358-366
Abstract | PDF | Erratum (Open Access)

Vanessa Ransbotyn, Thorsten B. H. Reusch
Housekeeping gene selection for quantitative real-time PCR assays in the seagrass Zostera marina subjected to heat stress
2006, 4:367-373
Abstract | PDF (Open Access)

Noureddine Yassaa, Aurélie Colomb, Karin Lochte, Ilka Peeken, and Jonathan Williams
Development and application of a headspace solid-phase microextraction and gas chromatography/mass spectrometry method for the determination of dimethylsulfide emitted by eight marine phytoplankton species
2006, 4:374-381
Abstract | PDF (Open Access)

Kelly Younge, Brendan Johnston, Cory Christenson, Amit Bohara, Joshua Jacobson, Nancy M. Butler, and Paul Saulnier
The use of radial distribution and pair-correlation functions to analyze and describe biological aggregations
2006, 4:382-391
Abstract | PDF (Open Access)

Marcos and Roman Stocker
Microorganisms in vortices: a microfluidic setup
2006, 4:392-398
Abstract | PDF (Open Access)

Scott H. Ensign and Hans W. Paerl
Development of an unattended estuarine nutrient monitoring program using ferries as data-collection platforms
2006, 4:399-405
Abstract | PDF (Open Access)

S. Leigh McCallister, François Guillemette and Paul A. del Giorgio
A system to quantitatively recover bacterioplankton respiratory CO2 for isotopic analysis to trace sources and ages of organic matter consumed in freshwaters
2006, 4:406-415
Abstract | PDF (Open Access)


Solange Duhamel, Florence Zeman, Thierry Moutin
A dual labelling method for the simultaneous measurement of dissolved inorganic carbon and phosphate uptake by marine planktonic species
2006, 4:416-425
Abstract | PDF (Open Access)

Dianne I. Greenfield, Roman Marin III, Scott Jensen, Eugene Massion, Brent Roman, Jason Feldman, Christopher A. Scholin
Application of Environmental Sample Processor (ESP) methodology for quantifying Pseudo-nitzschia australis using ribosomal RNA-targeted probes in sandwich and fluorescent in situ hybridization formats
2006, 4:426-435
Abstract | PDF (Open Access)

Singer, G., K. Besemer, I. Hödl, A. K. Chlup, G. Hochedlinger, P. Stadler and T. J. Battin
Microcosm design and evaluation to study stream microbial biofilms
2006, 4:436-447
Abstract | PDF (Open Access)

Sarah E. Gilman, Christopher D.G. Harley, Denise C. Strickland, Olivier Vanderstraeten, Michael J. O'Donnell, and Brian Helmuth
Evaluation of effective shore level as a method of characterizing intertidal wave exposure regimes
2006, 4:448-457
Abstract | PDF | Appendix 1 | Appendix 2 (Open Access)

Please Note

Articles are added to the Table of Contents throughout the year. The month of publication is shown as a convenient guide to locating the most recent articles. Open Access articles are freely available for download. Other articles require an institutional or individual subscription.


Volume 1, 2003
Volume 2, 2004
Volume 3, 2005
Volume 4, 2006
Volume 5, 2007
Volume 6, 2008
Volume 7, 2009
Volume 8, 2010
Volume 9, 2011
Volume 10, 2012
Volume 11, 2013
Volume 12, 2014
Intercalibration Special Issue